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Explore Protein Structures in 3D

Search 200+ million predicted protein structures. Visualize, analyze sequences, and download structure files — completely free.

214M+
Structures
48
Organisms
100%
Free
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Protein Info

Name
Organism
UniProt
Gene
Length
Molecular Weight

Prediction Quality

Avg pLDDT
Very low (0)Very high (100)
● >90 Very high ● 70-90 Confident ● 50-70 Low ● <50 Very low

Sequence Copy

Free Tools
Protein Analysis Suite

Sequence Analyzer

Amino acid composition, molecular weight, isoelectric point, hydrophobicity

Ramachandran Plot

Backbone dihedral angle visualization for structure validation

Structure Compare

Side-by-side comparison of two protein structures

Amino Acid Reference

All 20 amino acids — properties, structures, and codes

Why ProteinStructure.fun
Features others don't have

Search by name

Type "insulin" or "hemoglobin" — we find the UniProt ID automatically. Most tools only accept IDs.

7 visualization modes

Color by confidence, rainbow, secondary structure, residue type. Switch between cartoon, stick, and sphere views.

Surface toggle

Visualize the molecular surface with transparency to see both surface shape and internal structure simultaneously.

Instant sequence stats

Protein length, molecular weight, organism, gene name — all displayed alongside the 3D structure.

Mobile responsive

Full 3D protein viewer that works on phones and tablets. Most protein tools are desktop-only.

One-click downloads

Download PDB and mmCIF files instantly, or open directly on AlphaFold's site for more details.

From the Blog
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Feb 20, 2026

How AlphaFold works — the AI that solved protein folding

DeepMind's breakthrough predicted structures for 200M+ proteins. The science behind it.

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Feb 18, 2026

The protein folding problem — 50 years in the making

From Anfinsen's dogma to Levinthal's paradox to deep learning breakthroughs.

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